Bilal Shaikh

Bilal Shaikh

Biomedical Software Developer

BioSimulations

Karr Lab

Hi, I’m Bilal

I am a biomedical software developer with a background in biochemistry and computer science. My interests are varied, including machine learning, distributed and high-performance computing systems, and molecular and mathematical models of cells and disease. I am interested in developing tools to enable large-scale simulation and analysis of biology through the application of computational technologies, with the ultimate goal of allowing predictive tools that can elucidate molecular pathways and enable personalized medicine.

Currently, I am the lead developer for the BioSimulations project and am working towards a Master’s degree in computer science, focusing on machine learning.

I enjoy biking and hiking in my free time, along with raising a cat and many houseplants.

Interests
  • Systems Biology
  • Simulations
  • HPC
  • Machine Learning
Education
  • BA in Biochemstry, 2019

    Columbia University

  • MS in Computer Science, 2022 (expected)

    Georgia Institute of Technology

Projects

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Lunar Lander Reinforcement Learning Agent

Lunar Lander Reinforcement Learning Agent

I trained an agent in the OpenAI Gym LunlarLander-v2 environment using Double DQN, a Q-learning algorithm that uses two deep neural networks to estimate the value of each action in a given state.

BioSimulations

BioSimulations

Reproducing and Reusing Biomodels and Simulations

BioSimulators

BioSimulators

Registry of biosimulation tools

Datanator

Datanator

Data for Modeling and Simulating Cells

runBioSimulations

runBioSimulations

Free tool for executing a wide range of simulations

Recent & Upcoming Talks

Contact