Academic

BioSimulations
Reproducing and Reusing Biomodels and Simulations
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BioSimulations
BioSimulators
Registry of biosimulation tools
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BioSimulators
Datanator
Data for Modeling and Simulating Cells
Web Code
Datanator
runBioSimulations
Free tool for executing a wide range of simulations
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runBioSimulations
RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats
RunBioSimulations is an extensible, standards-driven web application for executing models across a broad range of modeling frameworks, simulation algorithms, and model formats and visualizing and sharing their results.
Bilal Shaikh, Gnaneswara Marupilla, Mike Wilson, Michael L Blinov, Ion I Moraru, Jonathan R Karr
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RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats
BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks
BpForms and BcForms, are a toolkit for representing the primary structure of macromolecules as combinations of residues, caps, crosslinks, and nicks.
Paul F. Lang, Yassmine Chebaro, Xiaoyue Zheng, John A. P. Sekar, Bilal Shaikh, Darren A. Natale, Jonathan R. Karr
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BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks